PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G169100.1
Common NameB456_002G169100, LOC105785593
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 565aa    MW: 61264 Da    PI: 8.7842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G169100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Gorai.002G169100.1 67 FICEVCNKGFQREQNLQLHRRGH 89
                        89*******************88 PP

2zf-C2H213.20.00027143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H +t+
  Gorai.002G169100.1 143 WKCEKCSKRYAVQSDWKAHSKTC 165
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.07E-76689No hitNo description
Gene3DG3DSA:3.30.160.606.3E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00526789IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.996789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355130108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.07E-7138163No hitNo description
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAASSSLGPF GIREEDQHQH STAAPTSAMG PAPPPPQRKK RNQPVLPNPD VEVIALSPKS  60
LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLRQKTT KEVKRKVYLC PEPTCVHHDP  120
SRALGDLTGI KKHYSRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  180
RDSFITHRAF CDALAQENAR QPPSFNSIGN HLYGSTSNMS LGLSQVGTQM SSVQDQTSNN  240
SGGRDIFKLG GVARSTQFDH LLLSPSMGSS SFRPQQSMVS SAAFFMPESN QEHHPQQGIL  300
GNNKQYHQGL MMQFPEDIQN NTTNTPSPPS FFNLSFLSNC GNGTNPDANL TSSGLLTPEH  360
FDNETGGGGG GTSEASDPFS NTVMGNQITT NIPSVFAQSN NIAVQMSATA LLQKAAQMGS  420
TSSYKNASLM RSFGNSNFGG TLGDSTGNNL HELMNSIAGG GSNTFSFGHG QENPYANRSS  480
VEQEKHVEQQ PQILNVSGGG GSDRLTRDFL GVGQIVRSMS MGGVSQREQQ QQQEAMGLSA  540
LGSERSNITA PTNHQCLGGN GNFQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145880.0JX614588.1 Gossypium hirsutum clone NBRI_GE58088 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467157.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like isoform X1
SwissprotQ9ZUL31e-135IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D2Q7Q40.0A0A0D2Q7Q4_G
STRINGPOPTR_0008s14180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-131indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]